NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0001566

Scaffold Ga0334990_0001566


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0001566 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13260
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021297Metagenome / Metatranscriptome219Y
F076091Metagenome / Metatranscriptome118Y
F082694Metagenome113Y
F085382Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0001566_10649_10897F076091N/AMLGIYVGVPEDVLLQYKQEALGDLGKAVTSYSDSGTSVNKQFGLPPAQRIQEINYALSRIDSKRYGGAHTSVQKNWDMRVDL
Ga0334990_0001566_1104_1418F021297N/AMSDTVTLSQGNTFACTFVWTPGATGPANLLTTTLTSTVEDKCGNLYELTITKALDGLSFTVAYPGSTADWALGLGRWDIKFVFPGGGISRTEVFRVQVIDSVTV
Ga0334990_0001566_5221_5658F082694N/AMGTKSARHIVEAAVASHLTAQVELTGVNIYKGDSADTNELPKAIVLCDSARLPNDFPDGLGNYSCTVRVTLLDSADDVTLTDHRARMAAIAGAMQDLEALQAVFTLQADAHCYDITPLSEDEGVNERSWASVLVYDILVVVNPEG
Ga0334990_0001566_6625_6996F085382N/AMSLYGTFLADYQLLLADIGVPATVGANLFLVGLSSPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPMATLAPGKKLTVNGQVLRVKGQSYKQASAVIELTCIDDNQ
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