NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0001688

Scaffold Ga0334990_0001688


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0001688 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12800
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0001688_4442_4819F001298AGGMSLYSEFLPDAKEMIADFGVAGSANSGAITFKCLISDPAVQTVLEAGGYMERTQYNVRLPAATASWSLPDGSTGASTAIIVSGSPIASLAQGKKIVAGGKTVRITTQTYKPGSAWVTLVVIDDNQ
Ga0334990_0001688_5784_6218F001055N/AMSNSIRHVVESTLATYLSTQTGLAGVQILTGDSAVTQTLPKAVVLCDSARAPGDLPEGLGNYECSVRITLFSNADDTTLAVHRERCAALSDCMKSLDLIQAAFAATSGAALCYDVTYRSEDEGIDERSWATSFAFDILTCLDPE
Ga0334990_0001688_6297_6641F092032GGAVTALFVQSYTVTSAFNNTATVVNESGETVTARYDDIRSEITVEGVAKAATIPELGGTLTFIAKTNSAYPNGAASLTFKGTITKVDDRGSSKGFVSVSVTAESFEYINYTPTPPA
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