Scaffold Ga0335028

Basic Information
Taxon OID	3300034071 Open in IMG/M
Scaffold ID	Ga0335028_0000074 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034071 Open in IMG/M

Scaffold ID

Ga0335028_0000074 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	78686
Total Scaffold Genes	116 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	93 (80.17%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

78686

Total Scaffold Genes

116 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

93 (80.17%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001229	Metagenome / Metatranscriptome	741	Y
F002489	Metagenome / Metatranscriptome	554	Y
F008132	Metagenome / Metatranscriptome	338	Y
F036238	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335028_0000074_24128_24637	F000258	GGAGG	MVNYRVDAMLELRKYLWQKLKDADIFTASDYYSDSIGDEIVPIIPVQQSPELNHFLSGKKHIVYDKIGMSYEDLWAICCEQVLFTIYSTDINDINEIRNFMTDLFRRVDESARDVNNWTNLSDKFQFYSIFIADISPAAPSEELQGFLSTDIVLEIKYSRLSDSNGRFI
Ga0335028_0000074_25409_25807	F001229	N/A	MKLDVYKQFDAQDIETGSIVKEWVYYKTLDCHAKGIVSNSATTRSSDTQIFSNKYVNDQVVQIRTSEKLTLREKITNIRDSQGNCIWTELNFPTDTPTVFEVVGTTPLTDPFGRVLGYNSTTKRSENQQIGL
Ga0335028_0000074_62271_62483	F002489	AGG	MENEQRSSDLEDNLPMVNYIMLHRIYDLLTIIANKLVGPEDTSKMVSYHEEGYLLGPAPSYSAPDEETLF
Ga0335028_0000074_64065_64250	F008132	AGGAG	MTKWDTIQADVADQYAHLDEEEALMEWLGEEEDVFGFAKAIEIDHLTDEQLDEVFNMFGD
Ga0335028_0000074_71269_71418	F001043	AGGAG	MGDTYQDGFTDGARWAREEITERLREIDVYDIDTWLLDKLADMIEGGKL
Ga0335028_0000074_71621_72022	F036238	AGGCGG	MGDRANFGFRQSNGETIVLYGHWAGYNMLAKLADAVDKARPRWTDESYATRICISQLVGDDWNSETGWGLQVNSISDNEHKIPLIDWATQTFSLHEEAPWSESTEYKVRGMLDTPIFDMSLDSFVKKYSAALV
Ga0335028_0000074_73849_73986	F000441	AGGAGG	MSDDYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRVEQINL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335028_0000074

Overview

Ecosystem & Geography

Associated Families

Sequences