NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0016529

Scaffold Ga0335028_0016529


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0016529 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5160
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008296Metagenome335Y
F029029Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0016529_1121_1780F008296AGGMSESWVQEYDLLVSTLAVEYSRKYSIVETADIKQILWMWFVTHPNKYTEWSKLPPKDKEKLIAKSLRNAAITYCEKEKARKFGYDMVDLYYYDPSVIEAFLPSIISDSYEIPSKIQDLNFKFGKSGEVTDGNNWLVLRSDIEKAYNKLPEVKQNILRLKFSVENCEWTELGKELNTSADGARMRVSRAINSLIRILGGWRTYTDTDNLDVKEEDDDTRA
Ga0335028_0016529_1764_2003F029029AGAAGMTQEPKEIKDLFQKDYSRAMDLRGNPIGDICVCGSELFTAIVAFEYGEICFYFLDGECVDCGSLVTLPTPIDEHGMDCD
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