NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0019725

Scaffold Ga0335028_0019725


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0019725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4699
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023109Metagenome / Metatranscriptome211Y
F085345Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0019725_1_810F085345GGAVQLLLGNRKMVATLIAGLEIIGFSTAMATFAVNFAISYVVTRAFADNPETQQDMGVRQQVPPSAVNAIPIVYGNAYMGGTFVDAVLTTDQKTMYYVLAISSISPNGQFTFDTADMYYGDRKITFDGSDLTKVVSLTDEAGNVDTKISGNLYINLYKSTTGGTITSANGASAPSTVMGGSDIVVGQRWTGTRQMNGLGFAIVKLIYNRDADTTQLQPITFKVAHTLNGTGVAKAGDVWYDYMTNAVYGGAVDAAFVNSTSATALNAYGDQN
Ga0335028_0019725_788_1234F023109GGTGGMIRQATRYDIPRLLEIVEAYAYENPIKKLGESHNHFPRYVEELLFSIIHGRGFIYIDSHLRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDIVCTSISANGPLIDYTRRGYKSLSATFVRE
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