NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0071981

Scaffold Ga0335028_0071981


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0071981 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0071981_1534_1830F015582N/AMTDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKLSMLEDIHTEIRAKYPDFKPVYDSSMDAALNQDLGKYQEMTYSFSSRDLSGNRSE
Ga0335028_0071981_3_260F006181N/AMTTDMSTADILERVFAEWNHGSGRECEMFVNSKKRSLCVNDIVCVNGTYFQCASFGWHEVTPAYVNELEEAVAAHPSRVEGAWFAL
Ga0335028_0071981_912_1484F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENNVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGSSKKIKLDMTLNKGTKFTAKFLMSALGVTQPVLFPIIKEWEKQGVIKVNGTVKGEGKGRPATEYIVV
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