NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0108589

Scaffold Ga0335028_0108589


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0108589 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1809
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006984Metagenome / Metatranscriptome360Y
F018162Metagenome / Metatranscriptome236Y
F060900Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0108589_1561_1809F060900N/ALEAYADSQDQDTLRAIAEALDIELTKTVQFTASVEVTGTIEVNLLDPYDYDIEDEVTDALFADSNNGNIEVVDQEVCNVREA
Ga0335028_0108589_1_234F006984AGGAMPNWVYNTLTIQGPKSEVDYIKDRLNAPFTLAQETYGMGDINAHGFPTKIKEVTYSNPVFAFFNIHSYKDEGITDEEY
Ga0335028_0108589_589_912F018162GGAMLANLAEAVFKARPRWNDPSYATRITISQMVADQWNMETGWGLYVNEIGDNEHKVAIIDFEQQTFSLHEEAPRNDLDNKVNGMSNDAIFTMDLSNFVEKYADVVISV
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