NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335028_0176527

Scaffold Ga0335028_0176527


Overview

Basic Information
Taxon OID3300034071 Open in IMG/M
Scaffold IDGa0335028_0176527 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1339
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031358Metagenome / Metatranscriptome182Y
F054568Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0335028_0176527_1001_1339F031358N/AVGTPTIDRTDIRDSPVGMQTTDRINTLGSLAGICLDLDTIKGLPVGDSQHLASGLHLETGVDRGLIIDRSQSLLVDQGHPDIIPIQDKVGHPTERTGRTGTVPCPQGTPTLS
Ga0335028_0176527_1_627F054568GGAMGHDSQAFQAEINDKIHSKNRLDFESEDAVELNSYKFPKPRFYNPNRYQSERPMDTFELLSDIARQVGPKERPLTYQDFLEETLRKSIKPKKAKAAVLNSIETDPVYLKGINLSIDEQKMVALMDTGSTHNLLAYDVFITLKDKTFTPVNMDMKVAGSTLSNNIVGKAQLNTVFETTTGTVVLPLTYLVAHKLNGYHSIIGAQMLTNPR
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