NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_000996

Scaffold Ga0310127_000996


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_000996 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34981
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (77.97%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001991Metagenome / Metatranscriptome607Y
F050326Metagenome145N
F099179Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_000996_15896_16378F001991GAGGLAIFNKNTLTQVSGFNNQIIAGELVYNQKTYWNLTLNNESGSPFNLTGATITSQIIRRQLSNVRDSRYGLTFDISDYTPPPSPVNLTITNQNLSGGSFTLVIDEAAWSVLSTDTELDINANNPVGFSGNITIAIPASGSTPAQDLIVFLLFLVRSNGVTN
Ga0310127_000996_19989_20426F099179GAGMREATKYDVPHLIEMMKAYADEAGIEALKHNQNEPQVRNLFDQMIHGRGFVLVDDNLHGFLAAYITRNFWNRYVRELHEVAWWVMPEYRNTSLGGRLWLRFNKLAQYMLDSKRVDIVCTSLMPSSPDIDYTRYKFKPLQATFFRE
Ga0310127_000996_20423_21079F050326GGAGMSTPMTALNSASITHGEFVKLTTSTTTYTFCNAAAPITIGGNTFTSLGSLLSVGAVNREIKATSVDMVIGLIGIDPTNISLVLGSNIKGSTVEIWRGFFDSNYQIITSPSTQFFKRYQGIVSNISITEDWDENARSRTATCSISCSSFRSILESRIAGIRTNENNWKQLYASDASMNRVAAISGQYFDFGAPPKSGSQSDPGSAQTQLPDPNDIREAG
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