NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_002220

Scaffold Ga0310127_002220


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_002220 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20228
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (26.19%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085402Metagenome111Y
F099218Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_002220_12959_13357F099218N/AMTDVVKLMFDVEEGNASALDAFCQLTRLEKQIKAAKEQIQSQAINEAQMYGKTFTHMGFEIQCRSGAGRWKFDHIDEWVVVKNQLAAVEDMAKWAYKSEEKGVLPVTDGGEIITAAIYVAGSDTIALKEVEK
Ga0310127_002220_17566_17844F085402AGGAGMATEIKTETGQTHEVGQQTQVRKTIQRTRKMKLKGYFKPTPKRFRVLGDSIAAASLFIAGLNLDNPKLMMISGVCGAVGKFVTNFFAEDESK
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