NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_002577

Scaffold Ga0310127_002577


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_002577 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18480
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006138Metagenome / Metatranscriptome380Y
F019290Metagenome230Y
F045612Metagenome152Y
F086661Metagenome110Y
F088510Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_002577_1319_1699F019290N/AMIGEAFWGTTNIKVASAVAAFGGKLRTQDPVTRFIKPDGSQMVTFWFQSDGQGDKVKAEMERNWVNMQSDEESPIRYVRAALENRETLLGLVKRAEPIRVIQTGGQTLIVAENARPELKKAILKHI
Ga0310127_002577_217_540F086661AGGMAFQTIHKADGSVEYLDNRTLAEAKSFRIEIIRQATNQVVIESGLDEATQQNAALGIYPPERCEAIKSYIAACRNEYLRCKELILAAQTNDEADAVQFLAPPVPEGM
Ga0310127_002577_537_671F045612GGAGGMRYTYEDFMAALSYLECEGYIERFIDKDGSECVRICEGAEDCEV
Ga0310127_002577_668_901F088510GAGGVSADDHSVLIEIREKVARMETRQAYILELLTDHKTKMDRIEQDAHGLKGRVWLVSTIVFGVLAAAWEIVKNRLLGHP
Ga0310127_002577_931_1287F006138AGGAMAATTIGTTGLAFGLTTESIGLAQSFSETRNIEKNEVRNNTGDVVGVSYYNATTAYSLSFTAVSNGTYLAQAGSALATLANAATISGATIRIDSITVNKSNDAFVTVDISATGYPNVT
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