NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_002643

Scaffold Ga0310127_002643


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_002643 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18172
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F002621Metagenome / Metatranscriptome542Y
F004206Metagenome / Metatranscriptome448Y
F010533Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_002643_10237_10650F004206N/AMIPAITDYLLHKLPDSFKGWTREAVEDYVLFHAQQGTLKIATQDDRVVAVLVGWRQAGAEPKAWEWQTSDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYKKGSMPIFKVADKKYGIS
Ga0310127_002643_14614_15543F010533N/AMRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQQEFFAPTYSYQDTYSAGDVVYFPVEEKYYQWVNITPGAGQSPTTSGPNGTLNSIYWGEALPSYGNNDGNWDSTTSYTIGQIVLYPVTQEYYQLYAIAPAGTVPTNTAYWGILNKFLRNVSQTTNPDGTTRAVTIGETFSAWPADPRVTWRQQEVTYTFTDDGILVENDLPYVWLEFRKVPPLLSNAAEASAYAFPYRFCEICALKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPGR
Ga0310127_002643_16260_16478F002621N/AMEKHPRLSRTIWLIALLDCLGCQMTKVVLVPSGDPVMLAKPTKASVYSFDKDKKLVGPSTVVIPAGWYALPK
Ga0310127_002643_16904_17053F001272N/AMIKIEFTTEQVNSLLQLIDIAIKAGGYQNAKVGVPLADIILAAAQPKPE
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