NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_003447

Scaffold Ga0310127_003447


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_003447 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15199
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005322Metagenome / Metatranscriptome404Y
F011285Metagenome292Y
F018509Metagenome / Metatranscriptome234Y
F105051Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_003447_2753_3073F005322GAGMVNLNSLEPEAKPLSPEQKLWRAVFMQAIQDTFGICTVAMSRDEHRESKYWWKNYSQDFIELCEMAGFDPQRTFEKLKRYDLIKKGIIWNYTTNGKRKFADVVTTN
Ga0310127_003447_3075_3248F018509N/AMSGKIICPKCNGNGFVYSFNHDDRKKMPIDCDYCKNQGEVDITEDVMKDLTENKVLQ
Ga0310127_003447_3245_3361F105051AGGMTISGYKKAISKLLKAYHKKWDCFGKERKKNGSKKSRT
Ga0310127_003447_4949_5062F011285N/AMLVGCSKDISFDPATTISKELIRFIYKESLKEGPVME
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