Scaffold Ga0310127

Basic Information
Taxon OID	3300034072 Open in IMG/M
Scaffold ID	Ga0310127_003795 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034072 Open in IMG/M

Scaffold ID

Ga0310127_003795 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14204
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (60.87%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14204

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (60.87%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006139	Metagenome / Metatranscriptome	380	Y
F014971	Metagenome	258	Y
F029047	Metagenome	189	Y
F054621	Metagenome	139	N
F068473	Metagenome	124	N
F084137	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310127_003795_10031_10195	F006139	N/A	MDTEIVVSIVGGCFAVLVALISKIGHDNKKDHGIVHTALGRIEQKIDAHVESHD
Ga0310127_003795_10377_10904	F068473	N/A	MIAKAKPGVPGARDYIGNSDGPANAKRPGTEMWVRQAAKYSNGALWNNGTFMRRDIKGKPGQMSVHSTGRAMDLSYRKMPNKGIERGRNTARQFFKKVVANANQLGVQMVIDYRPKPWGASWRCDRQAWKRYTTKTVSGAPGGDWYHVELAPGMADNAEAVKAAFKAVFEVSTTP
Ga0310127_003795_11599_11877	F029047	N/A	MDNSEINNYIDPDNTLSEGTRHMLDPTQNAITKHQMAVFDLIDEICRPAHVPYKPKHADLIARLKHLAVDLDLSGNTTAWQTVSEAIEALGG
Ga0310127_003795_4402_4593	F084137	AGGCGG	MYYIIKSARLGEVGTEYEPKPGINVKALLWGGFIAEVNDQQPDEVSTPAPKKGAKNKKATKES
Ga0310127_003795_5425_6009	F054621	AGG	MAQPVLQVKGIQETLALLNKIDPSYRRKITVRIKRSGEIILNEARSMVAHYDNSKGNGAPLSGMVRGNLVRGRETSWRTDQVQKGYKIKVGVRPSRERYVDFNRGGYTEQVVFGAKPYRLMVVQSTDPAGVIYDHAGRNVSSLFVANLTKEEGQQPRVIDKAVTKNRDAVQQDIQSVIADVEKRTNTQLKQRVK
Ga0310127_003795_9892_10026	F014971	AGGA	MTYEEAIAMYPHDEVHIQVDGVVRTMTPAEYEEFIQRQVNAIPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310127_003795

Overview

Ecosystem & Geography

Associated Families

Sequences