NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_005657

Scaffold Ga0310127_005657


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_005657 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10609
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F003964Metagenome459Y
F006139Metagenome / Metatranscriptome380Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_005657_1314_1826F003964GGAGVAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKRIVQPVIDDANKLVPTGVPLSGMARNWQTRSGFQLLPWIPGMKQKIAAKINTRAIKEYNGNTTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMEEANRETA
Ga0310127_005657_5913_6077F006139N/AMDTQVVVALVGGGFAVVVALISKIGSDNKKDHGKVHQMLGRIEQKIDNHVENHR
Ga0310127_005657_6323_6763F001872AGCAGGMNEFIKQVIYHSNGALWNNGSYGRRDMKGKPGSLSVHATGRAVDLSYRGSARRPQASRKAAMPIIEKLVQNADELGIEMIIDYMPKPFGRAWRCDRQAWKKYSKPTIHGAPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0310127_005657_7762_8160F002421AGGAGMKTCTICKGSIAYPDIQGKTHFVCDGRVPAKKLAPFIQGMLASQSSADARWTRDEQNKVDAAILHVARTKGFFTSDDIWQHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGV
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