NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_012974

Scaffold Ga0310127_012974


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_012974 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5725
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004666Metagenome / Metatranscriptome428Y
F014250Metagenome / Metatranscriptome264Y
F015988Metagenome / Metatranscriptome250Y
F018162Metagenome / Metatranscriptome236Y
F018349Metagenome / Metatranscriptome235Y
F095357Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_012974_1935_2090F018349AGGAGGMDYREGFEDGVRFTREVIINNIRKWAETHEDGETLDWVADQIEFGTLDNDL
Ga0310127_012974_2370_2696F018162AGGMLGKLADAVIAARPRWQDPAYATRIAISQIVGNQWDMETGFGLHVNEISDNEHKIAIIDWEQQTFSLHEEDDHRNTDNKVRGMKNEAIFTMDLSTFCEKYALEGMLVN
Ga0310127_012974_3988_4209F015988GGAGGMESEYVRRTGQLKEYIKLHIISLEQDLEGISEQMESLDPASKDYNELDFEYNHWSGQLLSARHILSVVEDILG
Ga0310127_012974_4206_4493F014250GGAGGMMNSAYLPERLQKLIDIGESGTNILHGQLKVLMLEAEEQLALAQEEEDRTEEAMDSMERKYWEGVLDALGDVYALTYQLAFAIDERTKKNENRIS
Ga0310127_012974_5185_5331F004666AGGAMTTKREYLVSKGITVGRRGRFSAAAKQALSEAEKNGIKFTAETKQAKN
Ga0310127_012974_5425_5709F095357AGGCGGMNSKEIKVGELLANSVEDHWFNPATLGHYLSQQPNWTIDRVMELVLWIIEKNAGVYKAKAGKQEISEGLAIAYTLDQMVNRIKEVNNFQHIRIP
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