NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_029469

Scaffold Ga0310127_029469


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_029469 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3107
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008745Metagenome / Metatranscriptome328N
F040465Metagenome / Metatranscriptome161N
F042744Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_029469_1799_2230F042744AGCAGMESSQVATAVVGPSVYKNVLGMIKQLRKMILKWISDRETCSPSLIQMFEGTKRWFREQVKIHFADSQKRYLQWRWRLAEKMFLQFREGQALTAAPALGKAAKAADLHLVLQRQMGKGANASAKKRQRKRIKVAEPPQLSVIPE
Ga0310127_029469_279_770F008745GGAMPNGYQITEEERDTLVCPRLECMDAQELLDVWLLPLVLEVGGILEDAYCTSHQLLSGGQGEERTLGLLQHQLMTAITELQVVQGWVACNMSSDKECRVLDGEEEDKSEGKVLKEGSEANQSADQQADCGKIDSNTQQADCGENKICRCESCDVCYYQWRLRHE
Ga0310127_029469_914_1210F040465N/AMSDEEVDECAQWPEITEEELSYAQDIWNREPSPDEERLDDWLLVMEEIVGIIGYTYYSTFQLLESKNVNNNCLLEALRALYIFAMAEVNVAKRKTTLS
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