NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_050559

Scaffold Ga0310127_050559


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_050559 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2084
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046201Metagenome151Y
F053094Metagenome / Metatranscriptome141N
F093342Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_050559_1197_1544F093342N/AMKQITHTIGGKEVTLDVGKMWFSKFYGEATSSDPLLMSELLSKPDKQFDFICGLVYGGLNCYNKVNGIKEFIPIEQVQEWVGAMDETDAASLINKFVEANKPKDQGEAQAQVVNP
Ga0310127_050559_1556_1864F046201GGAMRSEAFGQIGLLPVDFYGLEVDEYLLLRKGYIEKVKTESLLLRFQTALICEALIGKGNGARFVMDSWQLESKEDISQEQIRALLKAKKEKEALKRLKMKQNG
Ga0310127_050559_765_1190F053094N/AMADPTTISGSVMFIEYSDTPSGARKSAVCQSEGSFDGSRNVVSDETNCGTLKTLGPQNNRFTLNAVVDTAPDASEASFNDFQTMYANNTKKYWHLTDSAETVYHGGYGWIASLGQQNVSGQTAKFTMTIEIEGDIDTQPAS
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