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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0000007 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 366373 |
| Total Scaffold Genes | 513 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 341 (66.47%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031713 | Metagenome | 182 | Y |
| F036462 | Metagenome / Metatranscriptome | 170 | Y |
| F040370 | Metagenome | 162 | Y |
| F042051 | Metagenome / Metatranscriptome | 159 | Y |
| F042607 | Metagenome | 158 | Y |
| F071164 | Metagenome | 122 | Y |
| F094469 | Metagenome | 106 | Y |
| F103138 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0000007_157149_157904 | F094469 | AGG | MNKTALKKIIDHPDKDEIISKLVIGTSANDVHEWLQAKYTNVSEAKFVIAEKSIQSFKDNYLDIYNLIQEDIAKSKMAVATNTEEQLTLSVQNNSAYRSKMMELASKEIDVRKIVANLCVAIETRLAQVFDEVQADPRNINTRIDRLLIEYADTLGNILEKYYKFTEVPANNVVQHNVTLQVVDQHISVFHDVIRDVLSQMDLQTSLYFMEVFHKKMESLKSPEKNNILNTDMKLAEAKLLNETITQKLNE |
| Ga0310130_0000007_158218_158931 | F071164 | GAG | MRISEMLYSIASWLESPNNEALMLAEADAKCMKVVANSCVLAAALLKNAAEEVDHIEPPEESKITPEAVEKLANLAAVFDASGDLELKKQASVLDELLLSIAAPPGAIAAKKASEDARMDALRKKYIDPRQDLVETNMLADAQKAVEDSGMTKDYRILQAPLSTRTCPDHPGAQIARVGEHTWQCDLDKKIYNYDTGFTLSNGGKVPGGSVSQQTQHLSEPAHAIFDTREGRLGYNN |
| Ga0310130_0000007_165785_166474 | F042051 | AGGAG | MNTFGEVSWEDDVFSGGDKQKSNAKDLFLRLDEGSNEMRIITQPFQYLVHKYKKDPNNPKDFGQKVSCSAIHGSCPLCTMGDKAKPRWLLGVISRKTGTYKVLDVSFAVFSQIRKLARNTARWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAADQQIKDNADLDDLKRRVTPLTPDQVLKRMEKISGGGETTSVAMPSKKPEQKSKPAPVSMDDDDDAFPSYDA |
| Ga0310130_0000007_173081_173599 | F036462 | AGGA | MSRKVRLGDFLGNELEEDFVNFDLTEIQEVLLHLQESDPVDLAHAELLQQQALRGADILTEYLGKIVKTVGYLESKINSVKNKASLEYKAPDGSKTTTDMKIWAGNSSPEVDEISISLAKARASKVVLEKKYDIIIKSHHHYKDIAAGLRRTILGYTPTQATEREKIPEGYE |
| Ga0310130_0000007_173610_173969 | F042607 | GAG | MRVIDNKKVNMTEDEWGMYQKIVKSYTTNTNKGEDLFIDLFETDDAGIIIFLKPPSKRQTSFEVYLFLMSVMVHQHLRAAHSEVSNIVSQFKDKIKELDSKIKSLDEKISLIDNKQKKK |
| Ga0310130_0000007_208288_208482 | F031713 | GGAG | MSNKNIVIDLKARKDVDGQTFYVGKIKAPVLIDCYPGAVFLVFVSDKGEEQLQIAVMDNKDMDD |
| Ga0310130_0000007_29674_30045 | F103138 | AGCAGG | MKGTLLLNYDENTRQVEEEEKNRFLYSLLEQMGVPVNEFWNGEGNLSIPQKIKLRNILATYNIQAIDDLDGHMQVYVENELVGEWHKCTYKIKRDLRQIDPKKQLYLEMAINYWSIFEQQESE |
| Ga0310130_0000007_83767_84531 | F040370 | N/A | MLVYPKEIIIATLRDYFSKDSYYHYSKDQWGFANTVDHTDLPPGADLPYGPGANPDLSLTSNLSTRVFIGENYRYDGIHYPAILIKSGNSKYVPISINREKGGIQYDTTIFEDGYGNQSLIRRPVSFITAGVWDTSISIDVLSRSLRARDDLVELIGICLTEISFESLVDVGIVIKPISIGAPSESDDRNDKLFRQSINLDIRTEWRREIPVGNLIDTIVFAVTFQNIDNPAAPVPQNLAINTEVSITDLLLQI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |