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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0000465 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32533 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (76.79%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006545 | Metagenome / Metatranscriptome | 370 | Y |
| F012773 | Metagenome / Metatranscriptome | 277 | Y |
| F054845 | Metagenome | 139 | Y |
| F090330 | Metagenome | 108 | Y |
| F090344 | Metagenome | 108 | N |
| F093836 | Metagenome | 106 | N |
| F101123 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0000465_22034_22375 | F006545 | N/A | MKIKDAAKLFEKYDKRTTEKMAEHNRSGGNVRAPVRSTKNASTADKFDRGNFAYRKASQALTQNHPLKNDKGEPTPAALQFKRWGFPVPQTQDDLRKLKALGARIKERNRKDS |
| Ga0310130_0000465_23645_23980 | F012773 | AGG | VKDKGVTVMIGLLGPGKEMGKESESLLEDDMSECPLATQDETINKGNKQKAVLTANYGPSEGEQKCGNCEYGMKLKGCGLKKGEVFCDIFEFKCAESNVCDAHEPKEEEEE |
| Ga0310130_0000465_24074_24418 | F093836 | N/A | MVQDELKNWAWWCAGYVGPPVQDKAASAEGNYVSEEVWEGQEARYEPDQLAGERVEEIVRNLPSFSRVVLKATYIQYPYHLEHSIAQRLRISTDRYKSELKKAHEMVARKLKND |
| Ga0310130_0000465_26928_27236 | F090344 | N/A | MSAAEIMDLTGHNKWTLFPILHRLIRENKITKKNLRYAPTGYSDKRIRNGRDEFFCADPFGLSGLQNAGDLQCKLRAMQAKTSATGTMQGLTAADGRKVRWN |
| Ga0310130_0000465_27434_27742 | F101123 | AGGAGG | MNLQIIDALWNKMLVTYGSEWTRKFDGMPLDEVKGAWADDLRGFTVEQIKYGLSMLGERPPNLIQFKDLCKKAPNYFDQPQLTYRPTPSEEKLAKFRRAYAD |
| Ga0310130_0000465_30527_30688 | F054845 | AGGAGG | MEDYDDAAGQAHQEDLLRQQEAEEDAGLFSPVYVLQGERLAAEIFYFKSMEVI |
| Ga0310130_0000465_31343_31576 | F090330 | AGGAG | MQNHGAAVVRITALCADLRDLTAPSILETKELEEVITRCIEIQKEAFHLQEWAMTSLDLEYAKAVEARKQKLARLTD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |