NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000492

Scaffold Ga0310130_0000492


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000492 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31156
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (2.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015094Metagenome257Y
F018370Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000492_100_801F018370N/AMIHILWCTLRPAQFKSSHTEWLKRADNPENIQTYVAVNWHQHANELRDYLKNNFMITLDTNKIGVCYPSYQLSSNLGVKMGKCEDSDIVVFASDDFMAPQSWDTYLINKFNGKEDCGLMVRDGYQKPDSSNMLHPAITIPIMTYGCLKKLNMTIYHPAYNHMFSDCELYNNLKDLNLLYDDRLNDETTFEHLHYAAGKRKADQADQAYNAKWKDDEATWNKRKILTVEERIKI
Ga0310130_0000492_24333_24512F015094N/AMPTKDKMFSLRLPEELLENYKRFCDENSFNISKRLRKFMERDIEIWKEKMIKKDNNSNK
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