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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0000836 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19490 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (8.57%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F055287 | Metagenome / Metatranscriptome | 139 | N |
| F066267 | Metagenome / Metatranscriptome | 127 | N |
| F080647 | Metagenome / Metatranscriptome | 115 | N |
| F080651 | Metagenome / Metatranscriptome | 115 | N |
| F095118 | Metagenome / Metatranscriptome | 105 | N |
| F095163 | Metagenome / Metatranscriptome | 105 | Y |
| F102109 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0000836_12803_13306 | F080651 | N/A | MTTKDYIAKLNKAERAINGKRFVGLSSQIGRKQFKRVFQEGLDAGGGPIKPEYSTKPISISRNQTPIASAAGTYEGGYKEFKRALGRGKMVLFRLFSQMYLQSIVNPELRISDNGFVIATGMTYNAGNPKGKVDALLDKYGDAFKFSDAERKEFTERAEQIVVDLFK |
| Ga0310130_0000836_17482_18060 | F055287 | AGG | MNWTGFLLRHWGILALIAAFILGKQSCNYKAEAERHASNYVAIQQTASATARTLTLTNDQLREENRRLLDSLKIKGSRVEFVYRTKWRTKIDSFEVEVDRWHIETLPCPIQSFKLDTMCMKFAAIVHPEKPAVVTIQTDYELNVVGYWERPGKWFGGKLWSAILGKKDAYVKISSPCFADSSVYLNKFSKAQ |
| Ga0310130_0000836_18445_18741 | F080647 | N/A | MTTLLLTSLFIFGLWLSSVDGMILDDLRWRFISQFPELAKPVIDCPTCMASVYGTIAYWGDVIIANQPVDALTAIGWPIFVFCLAGLNGIILKLAKWS |
| Ga0310130_0000836_18732_19385 | F066267 | N/A | MVVSKITKWLVKHYPDAVLVALKPDAKNWKAGCEFMVDIDGHKYYKFRDSGDVPLVRYKEIQAVLIQLDNRLTSDELTSILAIARESVVAAIEGQSRKDRGKGLQQCLWAIQEAESRHKELGLHTDLIVELAALNLIRDDENPFEINETIQAEKLRLFKREFVNHDFFLSAGMNEFLPNAEQLADVWQRLWQASDQFQTKKKDILKSILGEIRSSIG |
| Ga0310130_0000836_345_1286 | F095118 | N/A | VSLATLPGFDLYQADYVSDAQQSSGYDVMTAAVERAGDKIVSDFRSFMDIKGRFNSVVDKGTIGYFDENKVNDAAKVGKYAGVEILVSDYPYLKFNLNSVSIFFAGAATDNIYIIDIIQGTIIDTIPFTSVAGQITEVLINKSYPTNGQDLHLMVAVDAGLSAAFDTWINPTSCASCTKGRRSRFSDLLFTRAVETSKTGSLTDTNLIGIGYTHGVSLNYSIECDDNTWLCQFSNRLRRAMLYASGVELMDEILFSDRLNNVTTINKEDANEKRSLYVQYYNTEMQTLLANLRLPNDRCYTCTPMVVNRVNIP |
| Ga0310130_0000836_6488_6718 | F095163 | N/A | MIYANHLYNLATSKPRITMAEIEAMCLDKAKQGEMYCWVFNPIAEDDIEKLRTNGFEIEKHNNSSYRIDWAKPTNL |
| Ga0310130_0000836_6737_7270 | F102109 | N/A | MNTPKSLIEIGIAYNQEKMQVMMAMQMNGKGLVDFVSNYPDHVAIVAFDYAIKSYPYGADIERHEQGIRHGTTVIGEDMWPLCTPSDDGYSLELSKFGGEPQQDVAWYSFISDSDFMLIYSSKKWSIGYQEDDRWLAIEGMTKEVVDNANAMPFHDAFEYMLRMVSAIKVGAEWCDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |