NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0000900

Scaffold Ga0310130_0000900


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0000900 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18308
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (71.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045790Metagenome / Metatranscriptome152N
F055822Metagenome / Metatranscriptome138Y
F060853Metagenome / Metatranscriptome132N
F091922Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0000900_13281_13514F045790GAGGMSDIKELREELLEEAMEYLEEKFKTQKAFAKMFFKHKLSQGIPIDNYTAYMPQIYAPQEAIDLAKSMEAYVVGTNVK
Ga0310130_0000900_13586_13804F060853AGGAGMSIFDFNKCNLYLTPAPWRKRLQTRDEIIKDWKEGKDFRVENGPYCSIRDIEYIRSNFNRAYIVYDRGTIEI
Ga0310130_0000900_7079_7276F091922GGAGGMSRSVDYTTKLEKLIVDTLLPAYEDYCRRYPFSPLAKENIDYSLITPAKQKSDPGALLKPRKNLS
Ga0310130_0000900_9782_9985F055822AGGAGMAGYTREFLIDAYLWRFLKIISIERLLELEKIANHTYDKYGKDKFREYSSLDADYIKRYKEYLKCQK
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