NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001047

Scaffold Ga0310130_0001047


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001047 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16391
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (82.98%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F001781Metagenome / Metatranscriptome635Y
F082666Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001047_10215_10496F082666AGGAMIESAEAIEPRLQKLVDLGCTGIDIMHGELKNLMLEAEQEYSNYVKIEEETDYDDAMDSMERKYWEGMLDAYSHMYKMTYDLSFAISAKEAGE
Ga0310130_0001047_10493_10792F001781AGGAGGMKAGDKDKLNKCLEILDTTDLGLSLVWLWTWSTIKNFMEDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHDDVMEWMLNREYMVDSMFEEEEE
Ga0310130_0001047_4759_4968F000808GGAMDYLYSLTISYDGELVSTTRSSDLLEIVNAWNKCVDFGDAKEYATYNLSDPSGKMYTKNFYRNGVVNGK
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