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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0001404 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13161 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (20.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F025982 | Metagenome / Metatranscriptome | 199 | Y |
| F038646 | Metagenome | 165 | Y |
| F041147 | Metagenome / Metatranscriptome | 160 | Y |
| F058089 | Metagenome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0001404_2925_3179 | F058089 | N/A | MSTQPEDQFTFLYEDGKRKVLHEFQGIATDEIVDEMIQFLRGVGHLEINIIERLHEISRQYLELYEATSTIKLPMQQDDLDEVE |
| Ga0310130_0001404_4933_5883 | F002333 | N/A | MTTQLQQQELNPAQALIYTRTNISRAFQGFDDTEIAGIYLRGDDCLVVRRDGSEQTYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYIMFKGWHYTHALGHLTSNAKLQAHWADKFIHLSDSNKLITLLQSDQTDIGHLVAPDGLRLTNRPIDLDSDMEEEGSGVSPVTPEPYCSCGSFQRQLLNVSEFQAEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNHGAQAPLSHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKKQ |
| Ga0310130_0001404_6067_6561 | F038646 | N/A | MTMTDDIFGYARLVPHSRLWKSSSMTDDTLEYARQLVANQPMKLPAHRNYHLEIPDDLHWELVRLGAELKMDYEVYAEEILKMHAEDAISKRIVARAYNDPSWVYKLNLECIEEEDGSMTIHIEWDEKDPDLQYWTNLGSKGQENLILTALRSACNSVLSNHDN |
| Ga0310130_0001404_6551_6967 | F002738 | N/A | MTIDTYGLTTEQYTEFFHKNLRFAAKLYLDTCNILSSEGVGNVDFKTVLDMYQEAVYTTNDDCRRYQKSNNPEALKENDVYGVVSSREELTQMIETLVTYTEALDAKLEALTEYVNNLVTVTTAGLEGIATTLDDKVD |
| Ga0310130_0001404_7343_8056 | F001018 | N/A | MTQITQAKLKDLSIIKLYEHYRALEQSLPLLTPESQELAKAELESCANLRSEKVDRVYYAMAAHEDALERIKKEGDLITQAKRHHESQLRSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKDLTVEISSDPEFWHTEERELYCVTEEVTTTKRVVLRSMSGEILDERIEPKTTTKVLPNLDAIRSAYQEGKHLPTGVKVLQEYSVRSKRIFAEPKLDMVSSEYPGELLPEDPGSD |
| Ga0310130_0001404_8079_8303 | F025982 | N/A | MSCHEHAIKDFDLQLEMNGLQMAMLMEEGKVLDYHMSEYEDLEQKKLKLLVGKRFHQNAANAYWYHMQREKAGK |
| Ga0310130_0001404_9452_9844 | F041147 | N/A | MPLLLMDTSQEPVDTIKQWQDWYRKHRIVAEIDVPLVTKESRENLHETSNATTTLDGSNNLLTDYCKAMSFQKAKEYFADTVAEFANELSGKELYKAFYAAAMDNMECVEKEYNKAKQLVDMLRCNNVAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |