NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0001491

Scaffold Ga0310130_0001491


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0001491 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12661
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F015730Metagenome / Metatranscriptome252Y
F076926Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0001491_12337_12504F015730AGGAGMLTQTTLDKIVYEYQHGGVQGNHPELTTYERKALLGYLFRLPSKCSPECEATHTA
Ga0310130_0001491_9046_9258F076926GGAGLKIQIVSKYLALAEEGLVPGILCPVDQGLLMPNLDLNDTIYLYCLSCNYKNSMGLEVYDGIEKAVRKHTN
Ga0310130_0001491_9294_9530F002489N/AVKNFGKILEDQMTEQNQNLEDNLDMVNYIMLHRIYDLLTLIANKLVGPEDTSKLIEYHDQGFLLGPTPSYTPQESEEK
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