Scaffold Ga0310130

Basic Information
Taxon OID	3300034073 Open in IMG/M
Scaffold ID	Ga0310130_0001607 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034073 Open in IMG/M

Scaffold ID

Ga0310130_0001607 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11932
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (42.42%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

11932

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (42.42%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.784	Long. (^o)	-98.26	Alt. (m)	Depth (m)	2896
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.784

Long. (^o)

-98.26

Alt. (m)

Depth (m)

2896

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F007026	Metagenome	359	Y
F015201	Metagenome / Metatranscriptome	256	Y
F019817	Metagenome	227	Y
F056537	Metagenome	137	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310130_0001607_10431_10643	F001165	N/A	MTTPNTPRIPDSLDMQRLQAMQLVAKMKESAERNGIGFIGGFIAPNGEKFVMTNMTDEDDINALMPEDLK
Ga0310130_0001607_10794_11069	F007026	N/A	MAYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDNDIVQEAIGLLEEIIDYDPTPNEPGEPPMTMDEMHSVAWKEHQEMHR
Ga0310130_0001607_11138_11365	F091979	AGGA	MLLAGRYAMANSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPIQNKQAELRLLDQMQRFTPDVRNIVR
Ga0310130_0001607_111_344	F002985	N/A	MSYVIACWQEGKPYAITANSKSNAFELIPLNSDVALNKIFSHPYRAGAQQILTWINSNDQDLAGKELQVRDESEFRK
Ga0310130_0001607_11487_11729	F019817	GAG	MPATAVPALSINQRNLYAYFLNHKKKHGNTPCFVPRLPSQNSRLEQYLQALVRLEEYGLICVDRSSDNYTGWIMLEPKAA
Ga0310130_0001607_1520_1750	F056537	N/A	MVLCYRVNDIMYINRHILFVSIDTKAMTLTYRGCKYNQEDQAKADRAWWNLAHRPWLCLKYRNVCYFPYVTGGQIK
Ga0310130_0001607_1747_1863	F015201	GGAGG	MNKALIVYLVNKKKKMTRSDVESKHAIKELQKQSVATF
Ga0310130_0001607_6575_6811	F003601	GGA	MDPSLPMTDYTDDQLLAMAMANLGEYIHENSPHYVLIEEDSRNEDDYDTWEYGTEPLPQDHTWHSTSIDVEVSPSEAD
Ga0310130_0001607_9407_9658	F001807	GAGG	MTVLAIENTSFTDTHVTVTAVVDEMRLLYRGSRLDPEEWAPALCQATIELDPEEQIPLDEDGFCAYLDHLDPQWQVLDPEDIG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310130_0001607

Overview

Ecosystem & Geography

Associated Families

Sequences