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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0001897 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10451 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (3.70%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006181 | Metagenome / Metatranscriptome | 379 | Y |
| F012446 | Metagenome / Metatranscriptome | 280 | N |
| F053851 | Metagenome | 140 | N |
| F082581 | Metagenome | 113 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0001897_2290_2958 | F053851 | N/A | MHNFTIDYTDGLVINNNYNDVEFAKDKQSHYMVKTYFVHKKIKRSLQSHPDQLGITATIEETHSSSDKTLLTTNNCNLGCWLMPSFVKHFVPYHVDIYYNDKLYQSDTMDCKYKLVNFTLHPKDDRELYTWMNVIENFKKQMHCDISIKNDTVASTTEFDHIADVKYNTDDTNKQYYLGLHIGRFYQPNTQMPDINYHPDQLHNKNSLDIINDILYYYTTII |
| Ga0310130_0001897_7323_7688 | F006181 | N/A | MKKNLIHVIYPDEAVNSFVLTTDMSTADILERVFAEWNHGSGMESEMFVKSKKRSLCVNDIVCVNGVYFQCASFGWNEVSLAYVVDLENEVSAHPSRTEGAWFALSDVMWERNKKRSLVV |
| Ga0310130_0001897_7756_8109 | F082581 | N/A | MTNVSNDSNMNSTSTKTSKAGRPAKNLKLILNKSFTLKDLQTLNPDVKAVTIRAAVLRGLSNGKYTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKAVATVTAEVVTETVTA |
| Ga0310130_0001897_8276_8848 | F012446 | N/A | MKKLQKEFTGNYDKVGMNKFVQIKKENNVAIYQRFNTDGTPRSYEVFIVKVVPKGASLPNGKVVEESYEQYPGANAFGKTAYDCRTIGQAEERFDQLVIKAKDSADAKEEAAKTGVRNRGRRGNSNKVKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |