NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0002089

Scaffold Ga0310130_0002089


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0002089 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9749
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F012446Metagenome / Metatranscriptome280N
F015582Metagenome / Metatranscriptome253Y
F029411Metagenome / Metatranscriptome188Y
F082581Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0002089_4748_4900F029411N/AMNVDFSTIDPQNELSDLYTPDYREQAINEDAYLDQAYEDRFECACMEDYQ
Ga0310130_0002089_6683_7039F006181N/AMKKNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGMECEMFIKSKKRSLCVNDIVCVNGVYFQCASFGWNEVTAQYVNELEESVAAHPSRVEGAWFALMDVMWERQNIVVA
Ga0310130_0002089_7105_7449F082581N/AMNNVTNDSNMNATSTKTAKVGRPAKNLKLILNKSFTLKDLQTLNPDVKAVTIRAAVLRGLSNGKFTKLPRNVQTGRKGKPANIFINSKVYKANLANLAKSKVTVNVNEPSTVTA
Ga0310130_0002089_7615_8187F012446N/AMKKLQKEFTGNYDKVGMNKFVQIKKENSVAIYQRFNTDGTPRSYEVFIVKVVPKGAPLPNGKTVEESYEQYPGANAFGKTAYDCRTIAQAEERFDQLVIKAKDSAEAKEEAAKTGVRNRGRRGTSKKVKLDMTLNKGTKFTAKFLMSVLGVSQPVLFPILKQWEKEGSIKVNGTVKGEGKGRPATEYIVV
Ga0310130_0002089_8234_8530F015582N/AMPDIDPELQAEQLEDAKYLEELNHYVNTLSAPSAESVALYRAKISMLEDIHTEIRAKYPGFMPVYDALSDPEYNQAIGKYQENTYSFSSRDLRSSSNS
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