NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0002339

Scaffold Ga0310130_0002339


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0002339 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8946
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015858Metagenome / Metatranscriptome251Y
F033779Metagenome / Metatranscriptome176Y
F093771Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0002339_5050_5370F015858AGGAGMANLISWGVVYCSTWFGQVDETTLSIQNESAPPCFAPANDIATYYSDRVLADGGVVEGYDCLVAALEDLGEDTYYDIFDTYIQRMTDDGATLEGEECLIDQLFILN
Ga0310130_0002339_7545_7721F093771N/AMTKESADSVITSWSLTGAGLLVSYAHQALGLMVLLASLAYTLWKWRRDWLREKNRNVD
Ga0310130_0002339_8434_8832F033779N/AMRHNRLATLTILTSVLLAAVSGCNSAKPILESVIVRDTVIVTETRYLIDTLEVMKDTVIYQDKVRVQFQYIDRKVVVEAACEPDTIRITQTKIVAKQEPKVKKWTLESYLGALAFILTFAYLIKRWIDKLTE
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