NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0002812

Scaffold Ga0310130_0002812


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0002812 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7806
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015591Metagenome / Metatranscriptome253N
F041731Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0002812_2957_3208F015591N/AMTLTNDYEDPIAEYIEANAEGLCTSYIVIANIERINGDQSFWVTTLRNQTASTSLGLLESASAAEKYRIARSFNNRYDEDEDE
Ga0310130_0002812_847_1272F041731AGGAMNAIEGRDLTLPGDEQAVTYIRERLNSIQGRNRAKMATVITQAELAGRSISLKETKSHRRYEIARGMFLLFDSGNFDEDLVKDICSQITMQKYTKPGEALANLDWKQAQRFAEACHGIARDTLNLIYIPETNQFHIEEKAS
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