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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0005130 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5198 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (82.35%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000714 | Metagenome / Metatranscriptome | 924 | Y |
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F007470 | Metagenome / Metatranscriptome | 350 | Y |
| F015988 | Metagenome / Metatranscriptome | 250 | Y |
| F034924 | Metagenome / Metatranscriptome | 173 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0005130_1_354 | F000714 | N/A | YTTSKVTSLEWDLHNGRQSQKNVSLLQSKINTAKDIILEAYEMSDDQETLQSIAEALGIELTRDIQFTATIEVSGTITLNLLEDYDLESEITDCLYVDANNGSIQIDDQEVCHVREA |
| Ga0310130_0005130_2911_3117 | F015988 | N/A | MEYMKIHLISLEQDLENISQEMELLDPESKACKELDYEYNHMAGQILTARHFLSVATDIMNSSNERYE |
| Ga0310130_0005130_3117_3395 | F000263 | AGG | MDGYMEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQEIEDESGEAMDSMERKYCEGFLDSLTALYNLTYQLSFAIGARNEA |
| Ga0310130_0005130_354_566 | F000311 | GGA | MYFELTAPDRLSMERAYWDAQITGLDPVAIAPLTFNIGTGSIEKVSRIRDKYNLRESYVSDYEPTGYTGR |
| Ga0310130_0005130_3834_4064 | F001019 | GGAGG | MSYAPSLEILEVAYEVSPGGTRTFEVYDKSEIEPVQIPIFETESLTEAVEFCYNLDKDFIVRTYAEWEMRELLADL |
| Ga0310130_0005130_4051_4251 | F034924 | GAGG | LPIYRVFGTKYQNYYTIVSAADEYEAAEIANSRPTIDWELVPIDDEIEATDVFLDDDTSEDLQLNI |
| Ga0310130_0005130_569_724 | F007470 | GGAG | MDYQDGFEDGVKFAREVITANIRLWAESEDEGQVYDDIADRIEFGTVDYDL |
| Ga0310130_0005130_925_1329 | F000450 | AGGCGG | MGDRANFGFVQPNGNTIVLYGHWAGHQMLARLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFEQQTFSLHEEAPRNDLDNKVNGMSNEAIFTMDLSNFVEKYADVTLSV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |