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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034073 Open in IMG/M |
| Scaffold ID | Ga0310130_0006361 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4498 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F005092 | Metagenome / Metatranscriptome | 412 | Y |
| F014496 | Metagenome / Metatranscriptome | 262 | Y |
| F083931 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310130_0006361_1281_1490 | F000808 | AGGA | MEYTYAITTSYDGELVNTLRVSDMLEAVDAWTKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVSIR |
| Ga0310130_0006361_1966_2178 | F005092 | AGGA | MDKLEYALRQIRNCDLCLGKGVNYWSNGEDYDFEDCVCNTYGIILDDDGDVIWDNGLLSEPELLRSMEAI |
| Ga0310130_0006361_3290_3544 | F083931 | AGGA | MSNATYTDFPFTVNGVNFISRVYSHSEFLKQILSLPEGIFAQLNQEAITEIIGDPSLFSTPELLQELSRVNAGGSHAFILLGDN |
| Ga0310130_0006361_3661_3861 | F014496 | AGG | MKTYSIPDLLIGHTYYPRSMARKYQYGEINFAEKRNDIYFADGYEAYAIRFNVSKWATIALKVEDN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |