NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0017340

Scaffold Ga0310130_0017340


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0017340 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2346
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F005092Metagenome / Metatranscriptome412Y
F049499Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0017340_1582_1791F000808GGAGMEYTYAITTSYDGELVNTLRVSDMLEAVDAWYKCVDHGNAKEYATYNLSDPTGKMYTKTFYANGAVAIK
Ga0310130_0017340_1788_2012F049499N/AMTATITSMDYRLVDVLNSDQLEVNDLIGLGDEVVKIINIETIKDGFALTYENEFGEKDVVECGDNEQFELFIYS
Ga0310130_0017340_950_1162F005092AGGAMDKLTYALNTISNCDLCNGKGVNYWANGEDYDFEDCICNPYGIILDEDGDVIWDNGLLSEPELLASMEAN
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