NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0020339

Scaffold Ga0310130_0020339


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0020339 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2124
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F022646Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0020339_235_621F022646N/AMQIAKANIITSVKHQKFVASFPCVVCGNDTQVQCCHIRSIPKVGNVGKGIRDDKFCIPMCFACHTQQHLIGELEFFEKYNINPILISMKIASISPCNKINQAKQEGAYNGKLNYQEHIRNNKKSSLQS
Ga0310130_0020339_560_835F006893AGGMENLTIKNISEITKKVLCNHKLYKDINFFDVPHNKVCLAVIREITELSYNEIGKAYNKSWFTIYASVKDTQKNGLKAFTNRIIDLVKAEVK
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