NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0029897

Scaffold Ga0310130_0029897


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0029897 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1683
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041769Metagenome159Y
F085645Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0029897_1150_1545F085645AGGAGMNHDYAKPDPTPMAGADILTEAHHLITGPRQAEYSHPFDDYYKVKELFFTMTGTMLTVEQAILFMVCVKLARLSTNMEHGRWKRDTIVDAAGYLGCMSMAHEYRQEKLREVADREWDRVEQHITQPWAEQS
Ga0310130_0029897_890_1153F041769GAGMASMGPQLPKEQVMTYDPDALRQMNEEAQLRISELSTALGNVTEQRDTLEDSLTAALREVDAYKAHINQLNATIERLRLHIQQGVEL
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