NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310130_0045492

Scaffold Ga0310130_0045492


Overview

Basic Information
Taxon OID3300034073 Open in IMG/M
Scaffold IDGa0310130_0045492 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-6-XL
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1320
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002738Metagenome / Metatranscriptome533Y
F013517Metagenome / Metatranscriptome270Y
F020161Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0310130_0045492_2_544F020161N/AMTQITQAKLKELNVIKLYEHYDALEKSLPLLTPESQELAQAELEACANLRSEKIDRIYYAMASHEDALERIKKESDLITQAKRHHESQLRSLKNLLNYLRRVLPLNTNKITGRNYQFTLVKKKELTVEISTDPEFWHTDERKRYCVTEEITTTKRVVLRSMSGEVLSERTEPKTTTKVLP
Ga0310130_0045492_548_661F013517N/AMFESLLATVLPVIKDFLWAAAGMLLTYMLNKVQSQFN
Ga0310130_0045492_734_1129F002738N/AMSIDSYGFSSEQYTEFFHKNVRFAAKLYLDTCNILTGEGVGNVDFKTVLDMYQEAVYTTNDDCRRYQKSNNPEAVKDAEIYGLGPTREELMEEIQSVNAKVESLVDYISNLVTITTAGLEGIATTLDDKVD
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