NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373900_000303

Scaffold Ga0373900_000303


Overview

Basic Information
Taxon OID3300034078 Open in IMG/M
Scaffold IDGa0373900_000303 Open in IMG/M
Source Dataset NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5429
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location
Location NameUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050736Metagenome / Metatranscriptome145Y
F056130Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0373900_000303_3030_3716F056130N/AMSEFEVAKKSFLAFNDALENVAWKPGATRSTRFTAEYGYLQLIPNSNSITLRGTVNGAWQSLSNGTFPGSTGIIKYWLSTDYVTFDPNYESYILGNSSSVLSGSIESYGRSAIRQQAGWVTVTLDYRVRAMRTAVINVAGTDTNYVDIWVIKLSMLVSSQWSYVHDFDLQAKTLSVKTASYRFTSVTNQTTSVSVQIGSSPAQQVPITLVVPSSVVYNVVVADVQVSV
Ga0373900_000303_3732_4199F050736AGGAGMPAPAISQAILTGALIVVIFAVQVFYFYVVDNVWAEMVRRELKEITDYVADTIANLYFLANSTSSNPSLEKTLKIPLDVGGSSINLEIMKDQNNYAQTVKGSLQGKTWLNTTSWLPRGLLLDTGKTAVIESSARTVIAGCQRVSSKIYVWIAYKV
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