NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000257

Scaffold Ga0335020_0000257


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000257 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42207
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (68.35%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057142Metagenome136N
F085149Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000257_10653_11837F057142AGGMLSSEFAEDIFVEFYNLVSQQKISIQGQDFSPISSFHEKIINSGELTKNQANFLIKLLEKYKTMSAMAGLDYGSKLADLKWQRPFRVLDLSKTIYVELRENKLEICLKFPYQLKKEFEDEIASREALHTHGFWDSEDKVRRLDFYHYNLIALYEFACKHNFEIDDSFMIALGDVEEIWQNSECVSPHSTIGIYGVELKNSSQETKQWWDEHRRSSPVSDLLLAKSMGFVYQEKPQNLVEKIAASQENSFWIKSNQEFFELVKSFSGKICVLLDRSSATLPWLQNFVAAAEKSGVSREEIKVCFRENKESTTGLNDWIKIAGVGGKVETGRILIFESKPAKWLFKSDNDVTMLVTNNIFPPTNTMARDWFACHPCVIYLGDTRPTETKGQKIVEL
Ga0335020_0000257_42040_42207F085149N/ALQAQGLGDNEYEFYNVGVYDSTANLERAKQKFTQEWAEGGLEDVVLNVEEYLVNA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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