Scaffold Ga0335020

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0000282 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034082 Open in IMG/M

Scaffold ID

Ga0335020_0000282 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40880
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (70.15%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

40880

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (70.15%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001915	Metagenome / Metatranscriptome	617	Y
F003265	Metagenome / Metatranscriptome	496	Y
F004695	Metagenome	427	Y
F012214	Metagenome	282	Y
F098944	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0000282_13506_13784	F003265	N/A	VRWLLLLPFVLLVNAKSPCTIAEFYGISWLGDPSLRHSQLSMWLSINGDNCSSDKLVIIWNNLAMWAGTADSSELRGKVLYFYSKAIEREKK
Ga0335020_0000282_28325_28867	F001915	AGGA	MEWTLAHPLHDVDDIVNMADSIFGHEADGILTRDKAVFRKHVTVATTVQLFDKSKEFIAVCRGHRKFDTYLGPAETQDELLGYCWFDRGGYTTYANEEISNAKFHHVDLQLSPRLRVRLINEMIDQHILWAYQWGIPVVCSTSIRAEHDGFMKIHKKRGFAVNGSYAWIRTEKGMECLKK
Ga0335020_0000282_28852_29367	F098944	AGG	MFEEIRPEGSTVTSEEIKQRARDYAKAKRAQKKAMKLATGQIEPKEAIETVQVVDEFDMTAFVPRSQKQAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKV
Ga0335020_0000282_32355_34526	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRTFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDETEAIQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDNDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGAPFMDALSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMQIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQASKGPSAEQQETQSKVALNNAKVEESGSVTALNIRKAQDIDTDDMFEALAAKRGKLSSVQVD
Ga0335020_0000282_4047_5627	F012214	N/A	MSFTPDVPSNALGPNEYNSGKNVEADVRSIKKIFGEIQIASTIPDMPIFMEGGFRSETSWVYIVATRNASSQGKWYMITSTGITNITPGVGANPSVFLPNYTEDINITFASVGNVFFINDTLTNPMYFLPTSNEITVTSDAAWNYEPGVTSTRAGFVRNYCSPNVGNILIAGNITKVIGGTTYNYPTTVRWSQAFALQGYPTTWEPTLSNVANEQEVPVRGPLIDGFFLGGSFYVCSYWDTVVFSPISYQNSTAPIFGLRLLNQGRGLLNNNCWTNTDGNVYGVDARDIWMFNGSEFVSLGNQKVKDYFFSNLSPLYQNRIFMVNNTSKYQIEIYYPDLTSTGWCNKMLSWRYDLQVWNAPKDIQNACMGTEGPRWIDSSPDYYNLASRATVYAKGGVSSSRLIETAITNAFVGSAIDSQFERTNVALQTSNGPVPYSNKVYVHRLLPEIAGTGKISISVGGANSTAQAPVYGEVGTTIIDTDTPWVPTQQNSVRTVAVKFSSNDATDTWKMSAMNWQATVTEDAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335020_0000282

Overview

Ecosystem & Geography

Associated Families

Sequences