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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0000598 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26991 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (74.42%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007913 | Metagenome / Metatranscriptome | 342 | Y |
| F018159 | Metagenome | 236 | Y |
| F024500 | Metagenome | 205 | N |
| F057985 | Metagenome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0000598_16544_16729 | F007913 | GGAG | MTARSQNSEILARLDRIEKDLGTIKMELAETRGAYRLAKFVIALLGVSGLGGVLAWMQGQ |
| Ga0335020_0000598_21917_22444 | F057985 | AGGAG | VAANSLDRLTISFNVDSNYKALQLGFLEGANPGAYKRLLSIATLNAARTMVKPMRAEAPVGKTTRTPGRLRKSVTARRARFNTPAAVVGPRAGRSRDGGSGGAWYRWFVTSGISGVRQTKNGPKAVKAVPANPFVTRVSKNEAHQKTAIEAMAKTVESFFNNGAFRATILKFKRR |
| Ga0335020_0000598_24152_24595 | F018159 | AGG | MSFNDRTIIAGLAAHLTAQTPPTGYVLRTVHSFPPDNLAVVPAAVIIPGDDTIAYGASNRQITLTLNVVIYIQPQADLGRKYADLMTWRTWLRDSLIDGVTLDGTDAVAQASVTSTNIGTDTWADQDYLTITATVEIASVEAIATSA |
| Ga0335020_0000598_6453_6869 | F024500 | GGAGG | LATKHATPDKYDALEGYVAELQVALNVTYWKITVVRDAADVEAWADINPHAQAETADLRVSHDFWKQTPEHQREVLAHEMLHIVMARLDQTVEAMEEAFGKIAWAIYEPLFEDAAERVVDHLAKVMAPSLPLPEFPKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |