NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0012906

Scaffold Ga0335020_0012906


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0012906 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4958
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006698Metagenome / Metatranscriptome366Y
F015332Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0012906_3405_3785F006698AGGAMTRHYEELAVYEREGYEIIVDKTWEDISVADCFDETQFDIAEINHNIEHGNLDWFMLRVRVLVEGLELDSEYLGGCLYEDARQVLTDGTAEDLIAQSLDNAKQQVYRLYRKFQDLSWELDAEGCKV
Ga0335020_0012906_3_602F015332GGAGMFTADQVWGLAVAADRINDGYFKEPVWTQPDNDLTGPMVLVKDANKLLVKQWLRTNNFTVATDEDIAKGREIRNYFNGFLLKQISGKINEFEQQALRIAQMDEFTGRHMLEFAIVSCLPSVMIRDQSRNELAREVRASTQLQGAVGDKIQGEIEVVKCYYSKDYDKFRVTAKLVDSFVDFWYNSKLEAGDRVSIKAKIKS
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