NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0014167

Scaffold Ga0335020_0014167


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0014167 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4692
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024559Metagenome / Metatranscriptome205Y
F043403Metagenome / Metatranscriptome156Y
F077285Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0014167_1690_2082F043403GGAMTNTLKTLNSIINNTSVPIVNYTTNNTSLGGGSSGQFLTSTGNGTSWTNNPADSVLIAKNNPAELEVKGRMVINGRDLEERLTTIEKVLQIPERDVILEKKHPKLKKLYDEYINELSKYKMWHSIKGDND
Ga0335020_0014167_2075_2296F077285AGGMTDKKLQRLYEHYLEFTDQMCSEYSPLEVAAIMMAQSLTIYKSALDEEEYNLMVDNISNSRNKVKAFTRPVLQ
Ga0335020_0014167_2781_2972F024559GGAGGMTSALIKLILGITLFVIAIVIGPLLGIWSLNTLFPVLAIPYTIETWAAFALLFTTGSIYKFKK
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