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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034082 Open in IMG/M |
| Scaffold ID | Ga0335020_0023639 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3446 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000403 | Metagenome / Metatranscriptome | 1177 | Y |
| F005697 | Metagenome / Metatranscriptome | 392 | Y |
| F024931 | Metagenome | 204 | N |
| F025683 | Metagenome / Metatranscriptome | 200 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335020_0023639_1695_1904 | F000403 | N/A | VGDIQMSDFIEIIYPQTMTAKLMENGEIIAEYKVEQCDKCSMLTKFDAFGYQKGYDRNEKVIWFCAGCR |
| Ga0335020_0023639_1901_2392 | F024931 | N/A | MKMTLTHDEQMVCMLAAVKLTAESTKGADNPQRYQKDLATFEYLVESAEAIGSEWVVAKYFNLPFDPYENKFKIKADVGNAIEVRWTKYVAGQLIVHEYDRPTDIAVLVTGQAPHYFIAGWIPIAIAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI |
| Ga0335020_0023639_765_977 | F025683 | N/A | VVVVTAKNRENSKMVLDLLDPETLGRLVLVIILMVISAAAGYAKGFKEGKREGIARRKAMVRHIANKAVK |
| Ga0335020_0023639_977_1633 | F005697 | AGGCGG | MGFLDNYEASRERLERWLAKYPTGRIETRIVEFSAEKGYVLVEAKAFRNDTDLHPAGIDYAYGYQGAYQQNMKRWFVEDTTTSAIMRCQQLVMGGAERSTREIMEQVERTPAKVANADSTDYWTTKFGDLPSYKTAAEAEQSGVPSLGSSMDEIAKQLGGQLVQEAPQCKHGHMVWKQAHEGAPKQWGGYFCTERTKATQCTPRWYVLASDGKWKPQV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |