Scaffold Ga0335020_0043964

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335020_0043964

Scaffold Ga0335020_0043964

Overview

Basic Information
Taxon OID	3300034082 Open in IMG/M
Scaffold ID	Ga0335020_0043964 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2381
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001872	Metagenome / Metatranscriptome	623	Y
F006139	Metagenome / Metatranscriptome	380	Y
F044439	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335020_0043964_1073_1237	F006139	N/A	MDTQVMVALVGGGFAVVVALISKIGSENKKDHGKVHQVLGRIEEKIDNHVENHR
Ga0335020_0043964_1483_1923	F001872	N/A	MNEFIKQVLHHSNKAMWNNGSWGVRDVRSKPGTMSVHATGRAVDLSYRGGERHPNASRKVALPFVQLLCAHANDLGIEMVIDYFPAPYGRAWRCDRQAWKKYSKPTVSGSPGGDWFHIEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0335020_0043964_2137_2379	F044439	GGAG	MNYFAEKIIGLVLCTVFGFTVAVGAPDASGSPSGTIALAPYLIEASTTTSSTSSTIYIDPYSSACEQFSALAVNLGWPADQ

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