NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373913_0014642

Scaffold Ga0373913_0014642


Overview

Basic Information
Taxon OID3300034089 Open in IMG/M
Scaffold IDGa0373913_0014642 Open in IMG/M
Source Dataset NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1805
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Source Dataset Sampling Location
Location NameUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049735Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0373913_0014642_872_1459F049735N/AMKKALIACTLIPIALVSFDCTSVRRRFIVEGYTKNPGQMIKRIVIISELSPQNKDLAGLISAMTRDLIKTNRNYLVYETLSTEREVTEACKTRDGVLKMRVDRADAAGERIHLEITGELRRCSDNSVVWSATARASGKSRNRSLKNLVQDYVGEHGKQVERYAAPAFNVIEDIVEAMPNPELTEDELMEKIGLEN
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