Scaffold Ga0326723_0168564

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326723_0168564

Scaffold Ga0326723_0168564

Overview

Basic Information
Taxon OID	3300034090 Open in IMG/M
Scaffold ID	Ga0326723_0168564 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	965
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.3286	Long. (^o)	-76.4792	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002758	Metagenome / Metatranscriptome	532	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326723_0168564_390_965	F002758	AGGAGG	VKVVALAVLTVLIVLPAEAVQRQNNFSPSCDNDGRCKTSNVTASTASQTPSLRGHQIRTSERKPHHVVDANGNSMLVTVQTAYGFNITVHPAYASKFLKFFALLKERGYKVPANITKCWAPHGTHVPGSNHYIGAACDVQTGWNRGPEFVYHMNDIVTQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAME

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