NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326723_0305506

Scaffold Ga0326723_0305506


Overview

Basic Information
Taxon OID3300034090 Open in IMG/M
Scaffold IDGa0326723_0305506 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.3286Long. (o)-76.4792Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003544Metagenome / Metatranscriptome480Y
F027459Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0326723_0305506_200_337F027459AGGAGVPEAVTLRWPWRVIALVAIAALGYLVWRGYQQPELILDLGNLRFC
Ga0326723_0305506_330_713F003544N/AATPPNDPNQLGLAILELLLFTEGINCLTLGSGVPAQEVAGAARSYKVCLAILLFDRGISGKIAGQEIRSLRAALPEDLPLVVSGRAVNLLAKPIANVRTAADFSSVMATVRELGVVGTAPQELQQRA

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