Scaffold Ga0326724_0004162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326724_0004162

Scaffold Ga0326724_0004162

Overview

Basic Information
Taxon OID	3300034091 Open in IMG/M
Scaffold ID	Ga0326724_0004162 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19849
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000780	Metagenome / Metatranscriptome	895	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326724_0004162_10818_11270	F000780	GGCGG	MDSPMENAKAKIGAKPPYRSGHLMCRTPLWGAAGFLGCAYFTWISFSHVSRHEYEWPHDAWTTATYIVWILLLAGLALDTRCLRERLFFGLLVVNFVAGCGLTLWRNVPSADVRTARIGTGALWGLAALMSLTTLGRTAEPRKNNYRVSS

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