NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326724_0013779

Scaffold Ga0326724_0013779


Overview

Basic Information
Taxon OID3300034091 Open in IMG/M
Scaffold IDGa0326724_0013779 Open in IMG/M
Source Dataset NamePeat soil microbial communities from McLean, Ithaca, NY, United States - MB00N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7861
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014867Metagenome259Y
F072644Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0326724_0013779_4573_5109F014867GAGGMRTLFPSSYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALVARKRLRRQALGQDSSDKSRDARTRWFDRYDVFMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPHAVEFIEGRRKTKQAGRNGNNLTNFAAHAPATEAGTKTVVHAATKNGDLE
Ga0326724_0013779_5526_5834F072644AGGALKHPDFLGLCCSVRGGTTSLAVKKEKPMSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKLFSLRRGGPSVREYRGGATTVQAS
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